Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W _ __init__() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) _apply_filter() (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.MetaFilter.MetaFilter method) _convert_data() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _define_event_metadata_types() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.IntraCUSUM.IntraCUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_event_metadata_units() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.IntraCUSUM.IntraCUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_sublevel_metadata_types() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_sublevel_metadata_units() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _ensure_event_counts() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _filter_events() (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) _finalize_initialization() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaWriter.MetaWriter method) _find_events_in_chunk() (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfinders.ThresholdBlockageFinder.ThresholdBlockageFinder method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) _get_baseline_stats() (poriscope.plugins.eventfinders.BoundedBlockageFinder.BoundedBlockageFinder method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) _get_configs() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _get_file_channel_stamps() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _get_file_pattern() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _get_file_time_stamps() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _init() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisModel.EventAnalysisModel method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaModel.MetaModel method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaView.MetaView method) (poriscope.utils.MetaWriter.MetaWriter method) _initialize_database() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaWriter.MetaWriter method) _load_event_data() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _load_metadata() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _load_metadata_generator() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _locate_sublevel_transitions() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.ClassicCUSUM.ClassicCUSUM method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _map_data() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _populate_event_metadata() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.IntraCUSUM.IntraCUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _populate_sublevel_metadata() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _post_process_events() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _pre_process_events() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _reset_actions() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.utils.MetaView.MetaView method) _set_file_extension() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _set_output_dtype() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.utils.MetaWriter.MetaWriter method) _setup_connections() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.utils.MetaController.MetaController method) _subset_controls (poriscope.plugins.analysistabs.MetadataView.MetadataView attribute) (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView property) _validate_file_type() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _validate_settings() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.BoundedBlockageFinder.BoundedBlockageFinder method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) _write_channel_metadata() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaWriter.MetaWriter method) _write_data() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.utils.MetaWriter.MetaWriter method) _write_event() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) _write_experiment_metadata() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) A add_columns_to_table() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) add_text_to_display() (poriscope.views.main_view.MainView method) ALLOWED_BASE_CLASSES (poriscope.models.main_model.MainModel attribute) alter_database() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) apply_settings() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) ax_hist (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) ax_vm (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) B build_all_points_histogram() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) build_clustering_frame() (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) build_ensemble_histogram() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) build_event_histograms() (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) build_event_overlay() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) C cache_plot_data() (poriscope.utils.MetaModel.MetaModel method) calculate_heatmap() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) calculate_histogram_bins() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) calculate_psd() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) call() (poriscope.utils.MetaModel.MetaModel method) cancel_walkthrough() (poriscope.views.main_view.MainView method) canvas_hist (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) canvas_vm (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) categorical_counts() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) check_cluster_column() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) check_for_existing_fit_columns() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) classify_1d_distribution() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) classify_2d_distribution() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) clear_cache() (poriscope.models.main_model.MainModel method) clear_display() (poriscope.views.main_view.MainView method) clear_milestone_dialog() (poriscope.views.main_view.MainView method) clear_sidebar_highlight() (poriscope.views.main_view.MainView method) close_help_window() (poriscope.views.main_view.MainView method) close_resources() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) close_settings_page() (poriscope.views.main_view.MainView method) cluster() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) cluster_gaussian_mixture() (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) cluster_hdbscan() (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) collect_parameters() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) combinedRegion() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) commit_cluster_columns() (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) commit_clusters() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) commit_events() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.utils.MetaWriter.MetaWriter method) commit_filter() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) commit_fits() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) compute_baseline_stats() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) confirm_fit_commit() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) confirm_unfiltered_run() (poriscope.utils.MetaEventTabView.MetaEventTabView method) connect_signals() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) construct_event_data_query() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) construct_fitted_event() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) construct_metadata_query() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) continuous_read() (poriscope.utils.MetaReader.MetaReader method) count_categories() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) count_subset_events() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) create_add_button() (poriscope.utils.MetaControls.MetaControls method) create_add_filter_button() (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) create_comboBox() (poriscope.utils.MetaControls.MetaControls method) create_delete_button() (poriscope.utils.MetaControls.MetaControls method) create_filter_delete_button() (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) create_filter_info_button() (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) create_info_button() (poriscope.utils.MetaControls.MetaControls method) createButton() (poriscope.utils.MetaControls.MetaControls method) createLabel() (poriscope.utils.MetaControls.MetaControls method) D delete_filter_by_name() (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) delete_plugin() (poriscope.utils.MetaControls.MetaControls method) denormalize() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) discard_generator() (poriscope.utils.MetaModel.MetaModel method) discard_last_tab_action() (poriscope.utils.MetaController.MetaController method) display_write_status() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.utils.MetaController.MetaController method) drop_cluster_columns() (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) drop_fit_columns() (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) E edges (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) embeded (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) emit() (poriscope.utils.QtHandler.QtHandler method) emit_progress_update() (poriscope.utils.MetaModel.MetaModel method) emit_text_to_display() (poriscope.utils.MetaModel.MetaModel method) enumerate_peaks() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) estimate_kernel_densities() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) export_csv_subset() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) export_plot_data() (poriscope.utils.MetaController.MetaController method) export_subset_to_csv() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) F fetchData() (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) fig_hist (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) fig_vm (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) filter_3d_scatterplot() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) filter_data() (poriscope.utils.MetaFilter.MetaFilter method) filter_peaks() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) filter_scatterplot() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) filter_xyerr_scatterplot() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) filterEmptySublevels() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) find_cluster_column_table() (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) find_events() (poriscope.utils.MetaEventFinder.MetaEventFinder method) find_mode_blockage_level() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) fit_capture_rate() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) fit_distribution_events() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) fit_ensemble_geometry() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) fit_event_histograms() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) fit_events() (poriscope.utils.MetaEventFitter.MetaEventFitter method) fit_histogram() (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) fit_histograms() (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) fit_threshold() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) force_serial_channel_operations() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) format_axis_label() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) format_cache_data() (poriscope.utils.MetaModel.MetaModel method) G gaussian_fit() (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) generate_report() (poriscope.utils.MetaModel.MetaModel method) get_base_experiment_name() (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaReader.MetaReader method) get_base_file() (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaReader.MetaReader method) get_baseline_stats() (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) get_callable_filter() (poriscope.utils.MetaFilter.MetaFilter method) get_channel_db_id() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_channel_length() (poriscope.utils.MetaReader.MetaReader method) get_channels() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaReader.MetaReader method) get_channels_by_experiment() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_column_names_by_table() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_column_type() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_column_units() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_committed_experiment_name() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.utils.MetaWriter.MetaWriter method) get_current_view() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.views.main_view.MainView method) (poriscope.views.widgets.walkthrough_mixin.WalkthroughMixin method) get_dependents() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_empty_settings() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.BoundedBlockageFinder.BoundedBlockageFinder method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfinders.ThresholdBlockageFinder.ThresholdBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.ClassicCUSUM.ClassicCUSUM method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.IntraCUSUM.IntraCUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) get_event_counts_by_experiment_and_channel() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_event_data_generator() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_event_generator() (poriscope.utils.MetaEventLoader.MetaEventLoader method) get_event_indices() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_event_metadata_generator() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_event_metadata_types() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_event_metadata_units() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_eventfinding_status() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_eventfitting_status() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_experiment_id_by_name() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_experiment_names() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_experiments_and_channels() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_fitted_event() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_key() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_llm_prompt() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_metadata_columns() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_milestone_step() (poriscope.views.main_view.MainView method) get_num_events() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) get_num_events_found() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_output_file_name() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.utils.MetaWriter.MetaWriter method) get_parents() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_plot_features() (poriscope.plugins.db_loaders.SQLitePeakDBLoader.SQLitePeakDBLoader method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_raw_settings() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_rise_time() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) get_samplerate() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaReader.MetaReader method) get_samplerate_by_experiment_and_channel() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_save_filename() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) get_selected_filters() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) get_session_state() (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) get_single_event_data() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_single_event_metadata() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_skip_region() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) get_sublevel_columns() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_sublevel_metadata_types() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_sublevel_metadata_units() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_subset_filters() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) get_table_by_column() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_table_names() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_valid_indices() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) get_walkthrough_steps() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.views.main_view.MainView method) (poriscope.views.widgets.walkthrough_mixin.WalkthroughMixin method) H handle_abort_all_analysis() (poriscope.controllers.main_controller.MainController method) handle_add_triggered() (poriscope.utils.MetaView.MetaView method) handle_delete_triggered() (poriscope.utils.MetaView.MetaView method) handle_edit_triggered() (poriscope.utils.MetaView.MetaView method) handle_kill_all() (poriscope.utils.MetaView.MetaView method) handle_kill_all_workers() (poriscope.utils.MetaController.MetaController method) handle_kill_button() (poriscope.utils.MetaView.MetaView method) handle_kill_worker() (poriscope.utils.MetaController.MetaController method) handle_menu_click() (poriscope.views.main_view.MainView method) handle_parameter_change() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaView.MetaView method) handle_reset_app_config() (poriscope.views.main_view.MainView method) heights (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) histogram_bin_edges() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) I insert() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) instantiate_analysis_tab() (poriscope.controllers.main_controller.MainController method) integrate_noise() (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) interevent_log_times() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) is_categorical_type() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) is_placeholder_item() (poriscope.utils.MetaControls.MetaControls method) K kernel_densities() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) kernel_density() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) L l50_max_height() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) launch_walkthrough() (poriscope.views.main_view.MainView method) (poriscope.views.widgets.walkthrough_mixin.WalkthroughMixin method) launch_walkthrough_if_needed() (poriscope.views.main_view.MainView method) load_actions_from_json() (poriscope.utils.MetaController.MetaController method) load_data() (poriscope.utils.MetaReader.MetaReader method) load_event() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) load_event_data() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) load_event_distribution_data() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) load_event_id_cache() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) load_event_plot() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) load_event_plot_data() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) load_events_by_id() (poriscope.utils.MetaSubsetTabModel.MetaSubsetTabModel method) load_filters() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) (poriscope.utils.MetaSubsetTabModel.MetaSubsetTabModel method) load_metadata() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) load_metadata_for_clustering() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) load_metadata_raw() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) load_metadata_subset() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) load_plugin() (poriscope.models.main_model.MainModel method) load_psd_data() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) load_session() (poriscope.controllers.main_controller.MainController method) (poriscope.models.main_model.MainModel method) load_trace_data() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) log() (in module poriscope.utils.LogDecorator) logger (poriscope.views.widgets.walkthrough_mixin.WalkthroughMixin attribute) logscale_and_filter_columns() (poriscope.utils.MetaModel.MetaModel method) logscale_and_filter_datasets() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) M MainController (class in poriscope.controllers.main_controller) MainModel (class in poriscope.models.main_model) MainView (class in poriscope.views.main_view) MainView.DockOption (class in poriscope.views.main_view) merge() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) N normalize_column_data() (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) notify_plugin_state_changed() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.utils.MetaEventTabView.MetaEventTabView method) (poriscope.utils.MetaView.MetaView method) O on_abort_analysis_click() (poriscope.views.main_view.MainView method) on_button_clicked() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) on_cluster_column_checked() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) on_clusters_committed() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) on_fit_commit_finished() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) on_label_changed() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) on_loader_changed() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) on_metadata_loaded() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) on_parameter_changed() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) on_plugins_button_click() (poriscope.views.main_view.MainView method) on_raw_filter_validated() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) on_reset_session_button_click() (poriscope.views.main_view.MainView method) on_subset_export_started() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) overlaid_histograms() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) P populate_available_plugins() (poriscope.models.main_model.MainModel method) populate_plugins_menu() (poriscope.views.main_view.MainView method) Q query_database_directly() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) query_database_directly_and_get_generator() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) R redefine_padding() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) refresh_available_plugins() (poriscope.controllers.main_controller.MainController method) (poriscope.models.main_model.MainModel method) (poriscope.views.main_view.MainView method) register_dependent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) register_eventfinder_channels() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) register_parent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) relay_add_text_to_display() (poriscope.utils.MetaController.MetaController method) relay_query() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) remove_pages_except() (poriscope.views.main_view.MainView method) remove_progress_bar() (poriscope.utils.MetaView.MetaView method) REPLACE_ATTEMPTS (poriscope.models.main_model.MainModel attribute) replace_class_names_with_classes() (poriscope.models.main_model.MainModel method) replace_classes_with_class_names() (poriscope.models.main_model.MainModel method) replace_filter_item() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) replace_raw_settings_option() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) report_channel_status() (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) request_column_names() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) request_column_type() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) request_column_units() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) request_commit_statuses() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) request_eventfinding_statuses() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) request_experiment_structure() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) request_fitting_statuses() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) request_loader_channels() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) request_plot_features() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) request_reader_channels() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) reset_app_config() (poriscope.controllers.main_controller.MainController method) (poriscope.models.main_model.MainModel method) reset_channel() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) reset_session() (poriscope.controllers.main_controller.MainController method) reset_sidebar_layout() (poriscope.views.main_view.MainView method) resizeEvent() (poriscope.views.main_view.MainView method) resolve_event_ids() (poriscope.utils.MetaSubsetTabModel.MetaSubsetTabModel method) restore_session_state() (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) restore_subset_filters() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) retranslateUi() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) run_generators() (poriscope.utils.MetaModel.MetaModel method) S sample_event_geometries() (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) sample_vm_solutions() (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) save_filters() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) (poriscope.utils.MetaSubsetTabModel.MetaSubsetTabModel method) save_session() (poriscope.models.main_model.MainModel method) save_tab_actions() (poriscope.models.main_model.MainModel method) (poriscope.utils.MetaController.MetaController method) send_analysis_tabs() (poriscope.controllers.main_controller.MainController method) serialize_channel_operations() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) serialize_channels() (in module poriscope.utils.SerializeDecorator) set_3d_scatterplot() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_all_points_histogram() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_available_subclasses() (poriscope.utils.MetaView.MetaView method) set_capture_rate() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_categorical_counts() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_clustering_result() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) set_column_type() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_column_units() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_commit_statuses() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_distribution_fits() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_ensemble_geometry_fit() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_ensemble_histogram() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_event_data_generator() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) set_event_histogram_fits() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_event_id_input() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) set_event_id_rows() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) set_event_index_input() (poriscope.utils.MetaEventTabControls.MetaEventTabControls method) set_event_overlay() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_event_plot_data() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_event_plot_data_generator() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) set_event_query() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) set_eventfinding_statuses() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_fitting_statuses() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) set_generator() (poriscope.utils.MetaModel.MetaModel method) set_heatmap() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_histogram_bins() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_kernel_densities() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_key() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) set_loaded_filters() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) set_plugin_instances() (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaModel.MetaModel method) set_psd() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_query() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) set_range_inputs() (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) set_scatterplot() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) set_trace_data() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_trace_for_psd() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_xyerr_scatterplot() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) setupUi() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) show_edit_filter_dialog() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) show_filter_info_dialog_single() (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) show_message_box() (poriscope.utils.QtHandler.QtHandler method) show_milestone_step() (poriscope.views.main_view.MainView method) show_plugin_add_manager() (poriscope.utils.MetaControls.MetaControls method) show_plugin_edit_manager() (poriscope.utils.MetaControls.MetaControls method) show_selection_tree() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) show_walkthrough_intro() (poriscope.views.main_view.MainView method) (poriscope.views.widgets.walkthrough_mixin.WalkthroughMixin method) size (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) start_eventfinding() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) start_fitting() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) stop_workers() (poriscope.utils.MetaModel.MetaModel method) switch_to_page() (poriscope.views.main_view.MainView method) sync_sidebar_highlight() (poriscope.views.main_view.MainView method) T time_bases() (poriscope.utils.MetaModel.MetaModel method) toggle_info_button() (poriscope.utils.MetaControls.MetaControls method) U unregister_dependent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) unregister_parent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) update() (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) update_actions_from_json() (poriscope.utils.MetaView.MetaView method) update_available_columns() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) update_available_plugins() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaEventTabController.MetaEventTabController method) (poriscope.utils.MetaModel.MetaModel method) (poriscope.utils.MetaView.MetaView method) update_axes() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) update_channels() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaEventTabControls.MetaEventTabControls method) update_clusters() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) update_column_names() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) update_column_units() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) update_column_units_label() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) update_event_metadata_post_processing() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) update_eventfinders() (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) update_eventfitters() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) update_features() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) update_filter_name() (poriscope.utils.MetaSubsetTabView.MetaSubsetTabView method) update_filters() (poriscope.utils.MetaEventTabControls.MetaEventTabControls method) (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) update_loaders() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.utils.MetaSubsetTabControls.MetaSubsetTabControls method) update_plot() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) update_plot_data() (poriscope.utils.MetaView.MetaView method) update_plot_features() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) update_plot_samplerate() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) update_plugin_history() (poriscope.controllers.main_controller.MainController method) update_progressbar() (poriscope.utils.MetaView.MetaView method) update_psd() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) update_raw_settings() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) update_readers() (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) update_tab_actions() (poriscope.utils.MetaController.MetaController method) update_units() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) update_writers() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) V validate_filter() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) validate_filter_query() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) validate_inputs() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) (poriscope.utils.MetaEventTabControls.MetaEventTabControls method) validate_raw_filter() (poriscope.utils.MetaSubsetTabController.MetaSubsetTabController method) validate_single_channel() (poriscope.utils.MetaEventTabView.MetaEventTabView method) W walkthrough_finished (poriscope.views.widgets.walkthrough_mixin.WalkthroughMixin attribute) WalkthroughMixin (class in poriscope.views.widgets.walkthrough_mixin) widen_shared_limits() (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) width (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel attribute) write_events() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method)