Index _ | A | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | V | W _ __enter__() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) __exit__() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) __init__() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) (poriscope.plugins.analysistabs.utils.walkthrough.IntroDialog method) (poriscope.plugins.analysistabs.utils.walkthrough.Overlay method) (poriscope.plugins.analysistabs.utils.walkthrough.StepDialog method) (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) (poriscope.plugins.eventfitters.PeakFinder._ClassificationWarningCollector method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaModel.MetaModel method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaView.MetaView method) (poriscope.utils.MetaWriter.MetaWriter method) (poriscope.utils.QtHandler.QtHandler method) __pass1() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) __pass2() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) __repr__() (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) __str__() (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) _advance_walkthrough_index() (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) _apply_filter() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.MetaFilter.MetaFilter method) _axes_valid() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _build_dist_page() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _build_load_event_data_args() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _calculate_heatmap() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _calculate_threshold() (poriscope.plugins.eventfitters.CUSUM.CUSUM method) _classification_confidence() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _classify_bound_star() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _classify_folded_unfolded() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _classify_peak_prominences() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _classify_translocation_direction() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _clear_cache() (poriscope.utils.MetaView.MetaView method) _clear_figure_state() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _collect_peak_statistics() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _column_exists() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) _commit_cache() (poriscope.utils.MetaView.MetaView method) _commit_clusters() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) _commit_events() (poriscope.utils.MetaWriter.MetaWriter method) _commit_fits() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _compute_theoretical_blockages() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _connect_global_signal() (poriscope.utils.MetaController.MetaController method) _construct_all_points_histogram() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _construct_event_overlay() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _construct_single_event_histogram() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _convert_data() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _curve_fit_bounded() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _define_event_metadata_types() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.IntraCUSUM.IntraCUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_event_metadata_units() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.IntraCUSUM.IntraCUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_metadata_types() (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_metadata_units() (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_sublevel_metadata_types() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _define_sublevel_metadata_units() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _delete_all_selected_filters() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _delete_filter() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _delete_filter_by_name() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _DNA() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _double_gaussian() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _end_of_subquery() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _ensure_event_counts() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _expand_event_indices() (poriscope.utils.MetaView.MetaView method) _export_csv_subset() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _extract_commit_event_parameters() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _extract_event_fit_parameters() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) _extract_event_parameters() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _extract_plot_event_parameters() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _extract_plot_parameters() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _factors() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaView.MetaView method) _fetch_event_data() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _filter_events() (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) _finalize_initialization() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) _find_ambiguous_id() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _find_events_in_chunk() (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfinders.ThresholdBlockageFinder.ThresholdBlockageFinder method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) _find_events_single_range() (poriscope.utils.MetaEventFinder.MetaEventFinder method) _fit_and_check_double_gaussian() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _fit_and_plot_ensemble_geometry() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _fit_and_sanity_check_double_gaussian() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _fit_double_gaussian() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _fit_double_gaussian_bounded_at_valley() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _fit_least_smoothed_spline() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _force_close_walkthrough_dialog() (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) _format_debug_msg() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _format_ranges() (poriscope.utils.MetaView.MetaView method) _gaussian() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) _gaussian_fit() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) _gaussian_intersection() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder static method) _generate_vm_ensemble() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _get_baseline_stats() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.eventfinders.BoundedBlockageFinder.BoundedBlockageFinder method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) _get_configs() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _get_event_id() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _get_event_index_text() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _get_file_channel_stamps() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _get_file_index() (poriscope.utils.MetaReader.MetaReader method) _get_file_names() (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.utils.MetaReader.MetaReader method) _get_file_pattern() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _get_file_start_indices() (poriscope.utils.MetaReader.MetaReader method) _get_file_time_stamps() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.LegacyElementsReader.LegacyElementsReader method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _get_n_events() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _get_padding_length() (poriscope.utils.MetaEventFinder.MetaEventFinder method) _get_sqlite_type() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) _get_total_channel_samples() (poriscope.utils.MetaReader.MetaReader method) _handle_clustering_settings() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) _handle_commit_events() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _handle_find_events() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _handle_fit_events() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) _handle_load_data_and_update_plot() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _handle_load_data_and_update_psd() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _handle_other_actions() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _handle_plot_events() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _handle_plot_histogram() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _handle_timer() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _handle_walkthrough_done() (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) _histogram_for_fit() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _init() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ClusteringModel.ClusteringModel method) (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisModel.EventAnalysisModel method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataModel.MetadataModel method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.ProteinModel.ProteinModel method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaModel.MetaModel method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaView.MetaView method) (poriscope.utils.MetaWriter.MetaWriter method) _init_walkthrough() (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) _initialize_database() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaWriter.MetaWriter method) _insert_event() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) _insert_event_data() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) _insert_sublevels() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) _jitter_degenerate_array() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _load_actions_from_json() (poriscope.utils.MetaView.MetaView method) _load_data() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _load_event_data() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _load_filter() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _load_metadata() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _load_metadata_and_cluster() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) _load_metadata_generator() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _locate_sublevel_transitions() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.ClassicCUSUM.ClassicCUSUM method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _logscale_and_filter_dataframe() (poriscope.utils.MetaView.MetaView method) _logscale_and_filter_multiple_columns() (poriscope.utils.MetaView.MetaView method) _map_data() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _merge_clusters() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) _merge_overlapping_ranges() (poriscope.utils.MetaEventFinder.MetaEventFinder method) _merge_ranges() (poriscope.utils.MetaView.MetaView method) _ml_automation() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _normalize_column_data() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) _on_sizes_checkbox_toggled() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) _overlay_fitted_gaussians() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _overlay_plot() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _parse_event_indices() (poriscope.utils.MetaView.MetaView method) _pass3() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _pass4() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _pass5() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _pass6() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _pass7() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _plot_1d_density() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _plot_1d_histogram() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _plot_3d_scatterplot() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _plot_all_points_histogram() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _plot_capture_rate() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _plot_categorical_histogram() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _plot_heatmap() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _plot_scatterplot() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _plot_type_changed() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) _plot_xyerr_scatterplot() (poriscope.plugins.analysistabs.ProteinView.ProteinView 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method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _pre_process_events() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) _qualify_conditions() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _queue_record() (poriscope.utils.QtHandler.QtHandler method) _rebuild_event_id_cache() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _references_column() 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(poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _shift_range_and_update_trace() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _shift_ranges() (poriscope.utils.MetaView.MetaView method) _show_add_filter_dialog() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _show_filter_info_dialog() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _show_next_pending() (poriscope.utils.QtHandler.QtHandler method) _slope_height_adjust() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) _sort_objects_by_channel_and_time() (poriscope.utils.MetaReader.MetaReader method) _split_on_opaque_spans() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) _start_eventfinder() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _start_eventfitter() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) _start_writer() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _summarize_vm() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _threshold_between_populations() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _trim_to_populated_core() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _undo_plot() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) _update_cache() (poriscope.utils.MetaView.MetaView method) _update_clusters_hdbscan() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) _update_distribution_ensemble() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _update_distribution_individual() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _update_event_histogram() (poriscope.plugins.analysistabs.ProteinView.ProteinView method) _update_event_plot() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _validate_file_extension() (poriscope.utils.MetaReader.MetaReader method) _validate_file_type() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.utils.MetaReader.MetaReader method) _validate_param_ranges() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) _validate_param_types() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaWriter.MetaWriter method) _validate_plot_parameters() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) _validate_settings() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.BoundedBlockageFinder.BoundedBlockageFinder method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) _warn_if_fitted_means_are_off_their_peaks() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) _write_channel_metadata() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaWriter.MetaWriter method) _write_data() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.utils.MetaWriter.MetaWriter method) _write_event() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) _write_experiment_metadata() (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) A add_columns_to_table() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) add_text_to_display() (poriscope.views.main_view.MainView method) alter_database() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) alter_database_status() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) apply_settings() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) ax_hist (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) ax_vm (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) C cache_plot_data() (poriscope.utils.MetaModel.MetaModel method) calculate_psd() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) cancel_walkthrough() (poriscope.views.main_view.MainView method) canvas_hist (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) canvas_vm (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) check_cluster_column_exists() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) check_column_exists() (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.utils.MetaController.MetaController method) classify_1d_distribution() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) classify_2d_distribution() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) clear_cache() (poriscope.models.main_model.MainModel method) clear_display() (poriscope.views.main_view.MainView method) clear_milestone_dialog() (poriscope.views.main_view.MainView method) clear_pending_filter_state() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) clear_popup_reference() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) clear_sidebar_highlight() (poriscope.views.main_view.MainView method) close_help_window() (poriscope.views.main_view.MainView method) close_resources() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) close_settings_page() (poriscope.views.main_view.MainView method) collect_parameters() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) combinedRegion() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) commit_events() (poriscope.utils.MetaWriter.MetaWriter method) connect_signals() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) construct_event_data_query() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) construct_fitted_event() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) construct_metadata_query() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) continuous_read() (poriscope.utils.MetaReader.MetaReader method) create_add_button() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) create_add_filter_button() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) create_comboBox() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) create_delete_button() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) create_filter_delete_button() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) create_filter_info_button() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) create_info_button() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) createButton() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) createLabel() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) D delete_filter_by_name() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) delete_plugin() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) denormalize() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) discard_generator() (poriscope.utils.MetaModel.MetaModel method) display_write_status() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.utils.MetaController.MetaController method) E edges (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) embeded (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) emit() (poriscope.plugins.eventfitters.PeakFinder._ClassificationWarningCollector method) (poriscope.utils.QtHandler.QtHandler method) emit_progress_update() (poriscope.utils.MetaModel.MetaModel method) emit_start() (poriscope.plugins.analysistabs.utils.walkthrough.IntroDialog method) emit_text_to_display() (poriscope.utils.MetaModel.MetaModel method) enumerate_peaks() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) eventFilter() (poriscope.plugins.analysistabs.utils.walkthrough.Overlay method) export_plot_data() (poriscope.utils.MetaController.MetaController method) export_subset_to_csv() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) F fetchData() (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) fig_hist (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) fig_vm (poriscope.plugins.analysistabs.ProteinView.ProteinView attribute) filter_data() (poriscope.utils.MetaFilter.MetaFilter method) filter_peaks() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) filterEmptySublevels() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) find_events() (poriscope.utils.MetaEventFinder.MetaEventFinder method) find_mode_blockage_level() (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) fit_events() (poriscope.utils.MetaEventFitter.MetaEventFitter method) fit_threshold() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) force_close() (poriscope.plugins.analysistabs.utils.walkthrough.StepDialog method) force_serial_channel_operations() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) format_axis_label() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) format_cache_data() (poriscope.utils.MetaModel.MetaModel method) G generate_report() (poriscope.utils.MetaModel.MetaModel method) get_base_experiment_name() (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaReader.MetaReader method) get_base_file() (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaReader.MetaReader method) get_callable_filter() (poriscope.utils.MetaFilter.MetaFilter method) get_channel_db_id() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_channel_length() (poriscope.utils.MetaReader.MetaReader method) get_channels() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaReader.MetaReader method) get_channels_by_experiment() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_column_names_by_table() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_column_type() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_column_units() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_current_loader() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) get_current_view() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) (poriscope.views.main_view.MainView method) get_dependents() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_dtype() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_empty_settings() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventfinders.BoundedBlockageFinder.BoundedBlockageFinder method) (poriscope.plugins.eventfinders.ClassicBlockageFinder.ClassicBlockageFinder method) (poriscope.plugins.eventfinders.ThresholdBlockageFinder.ThresholdBlockageFinder method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.ClassicCUSUM.ClassicCUSUM method) (poriscope.plugins.eventfitters.CUSUM.CUSUM method) (poriscope.plugins.eventfitters.IntraCUSUM.IntraCUSUM method) (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) (poriscope.plugins.eventfitters.NoFitter.NoFitter method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) get_event_counts_by_experiment_and_channel() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_event_data_generator() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_event_generator() (poriscope.utils.MetaEventLoader.MetaEventLoader method) get_event_indices() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_event_metadata_generator() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_event_metadata_types() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_event_metadata_units() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_eventfinding_status() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_eventfitting_status() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_experiment_id_by_name() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_experiment_names() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_experiment_names_for_tree() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) get_experiment_structure_ready() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) get_experiments_and_channels() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_fitted_event() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_key() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_llm_prompt() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_metadata_columns() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_milestone_step() (poriscope.views.main_view.MainView method) get_num_events() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) get_num_events_found() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_output_file_name() (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.utils.MetaWriter.MetaWriter method) get_parents() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_plot_features() (poriscope.plugins.db_loaders.SQLitePeakDBLoader.SQLitePeakDBLoader method) (poriscope.plugins.eventfitters.Basic_PeakFinder.Basic_PeakFinder method) (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_plugin_data() (poriscope.models.main_model.MainModel method) get_raw_dtype() (poriscope.utils.MetaReader.MetaReader method) get_raw_settings() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) get_rise_time() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) get_samplerate() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaReader.MetaReader method) get_samplerate_by_experiment_and_channel() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_save_filename() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) get_selected_filter_names() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) get_selected_filters() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) get_session_state() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.utils.MetaController.MetaController method) get_single_event_data() (poriscope.utils.MetaEventFinder.MetaEventFinder method) get_single_event_metadata() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_skip_region() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) get_sublevel_columns() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_sublevel_metadata_types() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_sublevel_metadata_units() (poriscope.utils.MetaEventFitter.MetaEventFitter method) get_table_by_column() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_table_names() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) get_valid_indices() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) get_walkthrough_steps() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) (poriscope.views.main_view.MainView method) H handle_abort_all_analysis() (poriscope.controllers.main_controller.MainController method) handle_add_triggered() (poriscope.utils.MetaView.MetaView method) handle_data_plugin_controller_signal() (poriscope.controllers.main_controller.MainController method) handle_delete_triggered() (poriscope.utils.MetaView.MetaView method) handle_edit_triggered() (poriscope.utils.MetaView.MetaView method) handle_global_signal() (poriscope.controllers.main_controller.MainController method) handle_kill_all() (poriscope.utils.MetaView.MetaView method) handle_kill_all_workers() (poriscope.utils.MetaController.MetaController method) handle_kill_button() (poriscope.utils.MetaView.MetaView method) handle_kill_worker() (poriscope.utils.MetaController.MetaController method) handle_menu_click() (poriscope.views.main_view.MainView method) handle_parameter_change() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) handle_reset_app_config() (poriscope.views.main_view.MainView method) heights (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) highlight() (poriscope.plugins.analysistabs.utils.walkthrough.Overlay method) I ignore() (poriscope.utils.MetaController.MetaController method) insert() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) instantiate_analysis_tab() (poriscope.controllers.main_controller.MainController method) integrate_noise() (poriscope.plugins.analysistabs.RawDataModel.RawDataModel method) is_categorical_type() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) is_placeholder_item() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) L l50_max_height() (poriscope.plugins.eventfitters.NanoTrees.NanoTrees method) launch_walkthrough() (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) (poriscope.views.main_view.MainView method) launch_walkthrough_if_needed() (poriscope.views.main_view.MainView method) load_actions_from_json() (poriscope.utils.MetaController.MetaController method) load_data() (poriscope.utils.MetaReader.MetaReader method) load_event() (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) load_event_data() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) load_metadata() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) load_metadata_raw() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) load_plugin() (poriscope.models.main_model.MainModel method) load_session() (poriscope.controllers.main_controller.MainController method) log() (in module poriscope.utils.LogDecorator) M MainController (class in poriscope.controllers.main_controller) MainModel (class in poriscope.models.main_model) MainView (class in poriscope.views.main_view) MainView.DockOption (class in poriscope.views.main_view) merge() (poriscope.plugins.eventfitters.NanoTrees.Sublevels method) moveEvent() (poriscope.plugins.analysistabs.utils.walkthrough.StepDialog method) N next_step() (poriscope.plugins.analysistabs.utils.walkthrough.StepDialog method) notify_plugin_state_changed() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaView.MetaView method) O on_abort_analysis_click() (poriscope.views.main_view.MainView method) on_button_clicked() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) on_label_changed() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) on_loader_changed() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) on_parameter_changed() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) on_plugins_button_click() (poriscope.views.main_view.MainView method) on_raw_filter_validated() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) on_reset_session_button_click() (poriscope.views.main_view.MainView method) P paintEvent() (poriscope.plugins.analysistabs.utils.walkthrough.IntroDialog method) (poriscope.plugins.analysistabs.utils.walkthrough.Overlay method) populate_available_plugins() (poriscope.models.main_model.MainModel method) populate_plugins_menu() (poriscope.views.main_view.MainView method) prev_step() (poriscope.plugins.analysistabs.utils.walkthrough.StepDialog method) Q query_database_directly() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) query_database_directly_and_get_generator() (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) R redefine_padding() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) refresh_available_plugins() (poriscope.controllers.main_controller.MainController method) (poriscope.models.main_model.MainModel method) (poriscope.views.main_view.MainView method) register_dependent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) register_parent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) relay_add_text_to_display() (poriscope.utils.MetaController.MetaController method) relay_baseline_duration() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) relay_column_type() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) relay_event_data_generator() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) relay_event_plot_data_generator() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) relay_event_query() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) relay_eventfinding_status() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) relay_eventfitting_status() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) relay_experiment_id() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) relay_plot_data() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) relay_query() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) relay_query_result() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) relay_table_by_column() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) relay_units() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) remove_pages_except() (poriscope.views.main_view.MainView method) remove_progress_bar() (poriscope.utils.MetaView.MetaView method) replace_filter_item() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) replace_raw_settings_option() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) report_channel_status() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) reposition() (poriscope.plugins.analysistabs.utils.walkthrough.StepDialog method) request_experiment_structure() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) reset_app_config() (poriscope.controllers.main_controller.MainController method) (poriscope.models.main_model.MainModel method) reset_channel() (poriscope.plugins.datareaders.BinaryReader1X.BinaryReader1X method) (poriscope.plugins.datareaders.ChimeraReader20240101.ChimeraReader20240101 method) (poriscope.plugins.datareaders.ChimeraReader20240501.ChimeraReader20240501 method) (poriscope.plugins.datareaders.ChimeraReaderVC100.ChimeraReaderVC100 method) (poriscope.plugins.datareaders.SingleBinaryDecoder.SingleBinaryDecoder method) (poriscope.plugins.datareaders.TCossaLabABFReader.TCossaLabABFReader method) (poriscope.plugins.datawriters.SQLiteEventWriter.SQLiteEventWriter method) (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.plugins.dbwriters.SQLiteDBWriter.SQLiteDBWriter method) (poriscope.plugins.eventloaders.SQLiteEventLoader.SQLiteEventLoader method) (poriscope.plugins.filters.BesselFilter.BesselFilter method) (poriscope.plugins.filters.WaveletFilter.WaveletFilter method) (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method) (poriscope.utils.MetaEventFinder.MetaEventFinder method) (poriscope.utils.MetaEventFitter.MetaEventFitter method) (poriscope.utils.MetaEventLoader.MetaEventLoader method) (poriscope.utils.MetaFilter.MetaFilter method) (poriscope.utils.MetaReader.MetaReader method) (poriscope.utils.MetaWriter.MetaWriter method) reset_session() (poriscope.controllers.main_controller.MainController method) reset_sidebar_layout() (poriscope.views.main_view.MainView method) resizeEvent() (poriscope.views.main_view.MainView method) restore_session_state() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.utils.MetaController.MetaController method) restore_subset_filters() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) retranslateUi() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) run_generators() (poriscope.utils.MetaModel.MetaModel method) S save_session() (poriscope.models.main_model.MainModel method) save_tab_actions() (poriscope.models.main_model.MainModel method) (poriscope.utils.MetaController.MetaController method) send_analysis_tabs() (poriscope.controllers.main_controller.MainController method) serialize_channel_operations() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) serialize_channels() (in module poriscope.utils.SerializeDecorator) set_alter_database_status() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_available_subclasses() (poriscope.utils.MetaView.MetaView method) set_baseline_duration() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_channel_db_id() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_cluster_column_exists() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) set_column_exists() (poriscope.utils.MetaView.MetaView method) set_column_type() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) set_data_filter_function() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_event_data_generator() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_event_filter() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) set_event_id_input() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) set_event_index_input() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) set_event_plot_data_generator() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_event_query() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_eventfinding_status() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_eventfitting_status() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) set_experiment_id() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_exported_event_count() (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) set_generator() (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaModel.MetaModel method) set_key() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) set_num_events_allowed() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_psd() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) set_query() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_range_inputs() (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) set_table_by_column() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) set_units() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) setupUi() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) show_edit_filter_dialog() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) show_filter_info_dialog_single() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) show_message_box() (poriscope.utils.QtHandler.QtHandler method) show_milestone_step() (poriscope.views.main_view.MainView method) show_plugin_add_manager() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) show_plugin_edit_manager() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) show_selection_tree() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) show_walkthrough_intro() (poriscope.plugins.analysistabs.utils.walkthrough_mixin.WalkthroughMixin method) (poriscope.views.main_view.MainView method) size (poriscope.plugins.eventfitters.NanoTrees.Sublevels attribute) start_walkthrough stop_workers() (poriscope.utils.MetaModel.MetaModel method) switch_to_page() (poriscope.views.main_view.MainView method) sync_sidebar_highlight() (poriscope.views.main_view.MainView method) T toggle_info_button() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) U unregister_dependent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) unregister_parent() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) update() (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel method) update_actions_from_json() (poriscope.utils.MetaView.MetaView method) update_available_columns() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) update_available_plugins() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaModel.MetaModel method) (poriscope.utils.MetaView.MetaView method) update_axes() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) update_channels() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) update_clusters() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) update_column_names() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) update_column_units() (poriscope.plugins.analysistabs.ClusteringController.ClusteringController method) (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinController.ProteinController method) update_column_units_label() (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) update_event_metadata_post_processing() (poriscope.plugins.eventfitters.PeakFinder.PeakFinder method) update_eventfinders() (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) update_eventfitters() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) update_features() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.MetadataController.MetadataController method) update_filter_name() (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) update_filters() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) update_labels() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) update_loaders() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) update_plot() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) update_plot_data() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) (poriscope.utils.MetaController.MetaController method) (poriscope.utils.MetaView.MetaView method) update_plot_features() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) update_plot_samplerate() (poriscope.plugins.analysistabs.EventAnalysisController.EventAnalysisController method) (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) update_progressbar() (poriscope.utils.MetaView.MetaView method) update_psd() (poriscope.plugins.analysistabs.RawDataView.RawDataView method) update_raw_settings() (poriscope.utils.BaseDataPlugin.BaseDataPlugin method) update_readers() (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) update_step() (poriscope.plugins.analysistabs.utils.walkthrough.StepDialog method) update_tab_actions() (poriscope.utils.MetaController.MetaController method) update_timer_channels() (poriscope.plugins.analysistabs.RawDataController.RawDataController method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) update_units() (poriscope.plugins.analysistabs.ClusteringView.ClusteringView method) (poriscope.plugins.analysistabs.MetadataView.MetadataView method) (poriscope.plugins.analysistabs.ProteinView.ProteinView method) (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) update_writers() (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) V validate_filter_query() (poriscope.plugins.db_loaders.SQLiteDBLoader.SQLiteDBLoader method) (poriscope.utils.MetaDatabaseLoader.MetaDatabaseLoader method) validate_inputs() (poriscope.plugins.analysistabs.utils.clusteringcontrols.ClusteringControls method) (poriscope.plugins.analysistabs.utils.eventAnalysisControls.EventAnalysisControls method) (poriscope.plugins.analysistabs.utils.metadatacontrols.MetadataControls method) (poriscope.plugins.analysistabs.utils.proteincontrols.ProteinControls method) (poriscope.plugins.analysistabs.utils.rawdatacontrols.RawDataControls method) validate_single_channel() (poriscope.plugins.analysistabs.EventAnalysisView.EventAnalysisView method) (poriscope.plugins.analysistabs.RawDataView.RawDataView method) W width (poriscope.plugins.eventfitters.NanoTrees.SingleSublevel attribute) write_events() (poriscope.utils.MetaDatabaseWriter.MetaDatabaseWriter method)